Science Lab Inventory Order Management to run in Linux online
.Science Laboratory Inventory and
Orders Management System: suitable for
school's science laboratories to
manage stored items (chemical and
equipment) and ...
Enter
Science Lab Inventory Order Management
. Science Laboratory Inventory and
Orders Management System: suitable for
school's science laboratories to
manage stored items (chemical and
equipment) and...
Enter
Computer Science Grader Assistant
. Computer Science Grader Assistant is
a software to help teachers and graders
in grading computer science assignments
that has to be compiled and executed. It...
Enter
LSID (Life Science Identifier)
. Life Science Identifier (LSID)
resolution protocol, to locate
biologically significant data over a
network, within middle-ware providing a
client A.P.I. for ...
Enter
Tree of Computer Science to run in Linux online
.A set of data for computer science
history (languages, OS, Distro, etc.)
and tools Audience: Education, System
Administrators. This is an application
that can...
Enter
Science Lab Inventory Order Management to run in Windows online over Linux online
.Science Laboratory Inventory and
Orders Management System: suitable for
school's science laboratories to
manage stored items (chemical and
equipment) and ...
Enter
ExptML: A Markup Language for Science to run in Linux online
.The Experiment Markup Language
(ExptML) is a markup language, in XML,
designed to store all the data and
metadata (context) from all parts of the
scientific p...
Enter
Science Lab Inventory Order Management
. Science Laboratory Inventory and
Orders Management System: suitable for
school's science laboratories to
manage stored items (chemical and
equipment) and...
Enter
Dicom Science
. DicomScience is a web based
application server in order to provide
the functionality of Teaching Files
Archiving and Distribution to all DICOM
based PACS Sys...
Enter
LSID (Life Science Identifier) to run in Linux online
.Life Science Identifier (LSID)
resolution protocol, to locate
biologically significant data over a
network, within middle-ware providing a
client A.P.I. for L...
Enter
Political Science: Campaign Simulator to run in Linux online
.The Campaign Simulator is an attempt
to statistically model and predict the
outcome of an American presidential
election; several users assume the roles
of co...
Enter
AWESOME DATA SCIENCE
. An open source Data Science
repository to learn and apply towards
solving real world problems. This is a
shortcut path to start studying Data
Science. Just f...
Enter
LSG (Life Science Grid)
. LSG is a Windows application
framework designed for visual data
integration and based on Microsoft .NET
2.0 and CAB. An admin utility manages
LSG apps, modul...
Enter
Catania Science Gateway Framework
. Audience: Science/Research,
Education, Developers, Testers. User
interface: Web-based. Programming
Language: JavaScript, JSP, Java.
Categories:Scientific/Eng...
Enter
The Earth Science Markup Language to run in Linux online
.ESML is an interchange technology that
utilizes external metadata to allow
applications to plug and play seamlessly
with Earth Science specific datasets in
he...
Enter
Political Science: Campaign Simulator
. The Campaign Simulator is an attempt
to statistically model and predict the
outcome of an American presidential
election; several users assume the roles
of c...
Enter
LSG (Life Science Grid) to run in Windows online over Linux online
.LSG is a Windows application framework
designed for visual data integration and
based on Microsoft .NET 2.0 and CAB. An
admin utility manages LSG apps, module...
Enter
Scientia - The science database to run in Linux online
.The idea of Scientia is to have a
place where scripts, info etc can be
downloaded for free. Books are expensive
and lots of good information is spread
all ove...
Enter
Life Science Identifier (LSID) Spec to run in Linux online
.Life Science Identifier (LSID)
Specification is a globally unique
identifying scheme for information
resources on the life sciences domain.
It is based on Int...
Enter
Scientia - The science database
. The idea of Scientia is to have a
place where scripts, info etc can be
downloaded for free. Books are expensive
and lots of good information is spread
all ov...
Enter
Life Science Identifier (LSID) Spec
. Life Science Identifier (LSID)
Specification is a globally unique
identifying scheme for information
resources on the life sciences domain.
It is based on In...
Enter
Dicom Science to run in Linux online
.DicomScience is a web based
application server in order to provide
the functionality of Teaching Files
Archiving and Distribution to all DICOM
based PACS Syst...
Enter
Science Fair In A Box
. SFIAB is a complete science fair
management system written in PHP with
MySQL backend database. It manages all
aspects of running a school, city,
regional, et...
Enter
LSID (Life Science Identifier)
. Life Science Identifier (LSID)
resolution protocol, to locate
biologically significant data over a
network, within middle-ware providing a
client A.P.I. for ...
Enter
Tree of Computer Science
. A set of data for computer science
history (languages, OS, Distro, etc.)
and tools. Audience: Education, System
Administrators. Categories:Database,
Library,...
Enter
Tree of Computer Science to run in Windows online over Linux online
.A set of data for computer science
history (languages, OS, Distro, etc.)
and tools Audience: Education, System
Administrators. This is an application
that can...
Enter
Science Honors Program - Tanks to run in Linux online
.A simple client-server tank game where
the users type in commands ("MOVE
5" or "SHOOT") to control
their tanks and attempt to destroy other
ta...
Enter
Social Science Measurement to run in Linux online
.This project aims to develop open
source psychometric data analysis
software, including estimation software
for Rasch and Item Response Theory (IRT)
models fo...
Enter
Social Science Measurement
. This project aims to develop open
source psychometric data analysis
software, including estimation software
for Rasch and Item Response Theory (IRT)
models f...
Enter
Political Science: Campaign Simulator to run in Windows online over Linux online
.The Campaign Simulator is an attempt
to statistically model and predict the
outcome of an American presidential
election; several users assume the roles
of co...
Enter
ExptML: A Markup Language for Science to run in Windows online over Linux online
.The Experiment Markup Language
(ExptML) is a markup language, in XML,
designed to store all the data and
metadata (context) from all parts of the
scientific p...
Enter
JSci - A science API for Java
. JSci is a set of open source Java
packages. The aim is to encapsulate
scientific methods/principles in the
most natural way possible. As such they
should gre...
Enter
JSci - A science API for Java to run in Linux online
.JSci is a set of open source Java
packages. The aim is to encapsulate
scientific methods/principles in the
most natural way possible. As such they
should grea...
Enter
AWESOME DATA SCIENCE
. An open source Data Science
repository to learn and apply towards
solving real world problems. This is a
shortcut path to start studying Data
Science. Just f...
Enter
LSID (Life Science Identifier) to run in Windows online over Linux online
.Life Science Identifier (LSID)
resolution protocol, to locate
biologically significant data over a
network, within middle-ware providing a
client A.P.I. for L...
Enter
The Earth Science Markup Language
. ESML is an interchange technology
that utilizes external metadata to allow
applications to plug and play seamlessly
with Earth Science specific datasets in
h...
Enter
Political Science: Campaign Simulator
. The Campaign Simulator is an attempt
to statistically model and predict the
outcome of an American presidential
election; several users assume the roles
of c...
Enter
The Earth Science Markup Language to run in Windows online over Linux online
.ESML is an interchange technology that
utilizes external metadata to allow
applications to plug and play seamlessly
with Earth Science specific datasets in
he...
Enter
Scientia - The science database
. The idea of Scientia is to have a
place where scripts, info etc can be
downloaded for free. Books are expensive
and lots of good information is spread
all ov...
Enter
Life Science Identifier (LSID) Spec
. Life Science Identifier (LSID)
Specification is a globally unique
identifying scheme for information
resources on the life sciences domain.
It is based on In...
Enter
SciPhi Science Fiction MU*
.A project to create a MU* interface
for Science Fiction based MU*s with full
internal scripting. Now being written in
C# Audience: Developers. User interface:...
Enter
Scientia - The science database to run in Windows online over Linux online
.The idea of Scientia is to have a
place where scripts, info etc can be
downloaded for free. Books are expensive
and lots of good information is spread
all ove...
Enter
Life Science Identifier (LSID) Spec to run in Windows online over Linux online
.Life Science Identifier (LSID)
Specification is a globally unique
identifying scheme for information
resources on the life sciences domain.
It is based on Int...
Enter
Computer Science Tutorials
. This is a collection of tutorial
projects that are used by my computer
science students to learn the ins and
outs of software design and development.
The pri...
Enter
Applied Science
. This is the work of Tim Hill (lead
programmer) and Lashan Dias (lead
artist). Audience: Developers, End
Users/Desktop. Programming Language: C#.
Categories:S...
Enter
SciPhi Science Fiction MU* to run in Windows online over Linux online
.A project to create a MU* interface
for Science Fiction based MU*s with full
internal scripting. Now being written in
C# Audience: Developers. User interface:...
Enter
Social Science Measurement
. This project aims to develop open
source psychometric data analysis
software, including estimation software
for Rasch and Item Response Theory (IRT)
models f...
Enter
Applied Science to run in Windows online over Linux online
.This is the work of Tim Hill (lead
programmer) and Lashan Dias (lead
artist). Audience: Developers, End
Users/Desktop. Programming Language: C#.
This is an ap...
Enter
Social Science Measurement to run in Windows online over Linux online
.This project aims to develop open
source psychometric data analysis
software, including estimation software
for Rasch and Item Response Theory (IRT)
models fo...
Enter
JSci - A science API for Java
. JSci is a set of open source Java
packages. The aim is to encapsulate
scientific methods/principles in the
most natural way possible. As such they
should gre...
Enter
ITB Computer Science Code
. Institute of Technology,
Blanchardstown Computer Science code by
the class of 2007-2011 on course BN104.
In this project we are open sourcing all
of our proj...
Enter
JSci - A science API for Java to run in Windows online over Linux online
.JSci is a set of open source Java
packages. The aim is to encapsulate
scientific methods/principles in the
most natural way possible. As such they
should grea...
Enter
Science Olympiad Scoring System
. This is an Excel based scoring system
for use at Science Olympiad tournaments.
Versions have been in use since 2002 at
tournaments all over the country. It i...
Enter
Science Olympiad Scoring System
. This is an Excel based scoring system
for use at Science Olympiad tournaments.
Versions have been in use since 2002 at
tournaments all over the country. It i...
Enter
PSLab Android App
. Repository for the PSLab Android App
for performing experiments with the
Pocket Science Lab open-hardware
platform. This repository holds the
Android App for...
Enter
MOLGENIS model-driven database platform
. MOLGENIS can be used to generate
databases for life science experiments
(micrroarray, mass spectrometry,
genomics) having a web user interface,
csv exchange ...
Enter
PSLab Android App
. Repository for the PSLab Android App
for performing experiments with the
Pocket Science Lab open-hardware
platform. This repository holds the
Android App for...
Enter
MolWgt
. Given the chemical formula, MolWgt
calculates the molecular weight of a
substance. Audience: Advanced End Users,
Developers, Education, Science/Research.
Use...
Enter
PocketAnalyzerPCA
. PocketAnalyzerPCA combines a
geometric algorithm for detecting
pockets in proteins with Principal
Component Analysis and clustering. This
enables visualizati...
Enter
PyBact
. PyBact is an open source software
written in Python for Bacterial
Identification. The software generates
simulated data matrix which accurately
represents th...
Enter
BioNLP-Corpora
. BioNLP-Corpora is a repository of
biomedically and linguistically
annotated corpora and biomedical data
sources. There are many resources
available in separa...
Enter
bruread
. bruread is a program to read and
display NMR data in the Bruker XWIN-NMR
format. The program has a command-line
interface and a graphic display based on
gnup...
Enter
WSciParser
. WSciParser (Web Science Parser) is a
handy small library created in C#.NET to
parse data from web science databases
(ISI Web, NCBI, PubMed.). Features:Full
e...
Enter
openSputnik
. openSputnik is a robust distributed
platform for massive scale
precalculation of genetic and genomic
data using contemporary bioinformatics
methods. Annotate...
Enter
WSciParser to run in Linux online
.WSciParser (Web Science Parser) is a
handy small library created in C#.NET to
parse data from web science databases
(ISI Web, NCBI, PubMed.) Features:Full
ext...
Enter
OTforge to run in Linux online
.OpenTopography facilitates community
access to high-resolution, Earth
science-oriented, lidar topography data,
& related tools. OTforge serves as
our open...
Enter
DEEP
. The Differential Evolution,
introduced in 1995 by Storn and Price,
considers the population, that is
divided into branches, one per
computational node. The D...
Enter
papco
. PaPCo is modular IDL software for the
analysis, distribution and display of
science data products. Primarily used by
the space science community but in princ...
Enter
TARIS
. TARIS (Tree Analysis and
Representation of Isopotential Surfaces)
is a software package designed for
molecular similarity purposes in the
field of Computatio...
Enter
STochastic Engine for Pathway Simulation
. Stochastic simulator for signaling
pathways occuring in biological cells.
Handles reaction-diffusion processes in
3D tetrahedral meshes. Please check our
new...
Enter
CTL-RP
. CTL-RP stands for Computation Tree
Logic Resolution Prover. Computation
Tree Logic (CTL) is a branching-time
temporal logic. CTL-RP is a resolution
based the...
Enter
genome
. This project provides visual
interactive interfaces to custom
algorithms used in genomes research.
Audience: Developers, Education,
Science/Research. User in...
Enter
CTL-RP to run in Linux online
.CTL-RP stands for Computation Tree
Logic Resolution Prover. Computation
Tree Logic (CTL) is a branching-time
temporal logic. CTL-RP is a resolution
based theo...
Enter
BYU EDIF Tools to run in Linux online
.An API for manipulating EDIF netlists
in Java. We use this API to analyze
netlists as a part of our FPGA
reliability project. We intend to keep
the API as gen...
Enter
BYU EDIF Tools
. An API for manipulating EDIF netlists
in Java. We use this API to analyze
netlists as a part of our FPGA
reliability project. We intend to keep
the API as ge...
Enter
TreQ
. TreQ aims at mapping reads from next
generation sequencing (NGS) data to a
reference genome, with emphasis on
accuracy in the presence of structural
variatio...
Enter
AutoDock Software in Parallel with GPUs
. Using the CUDA API this project
modifies the AutoDock software to run in
parallel on NVIDIA GPUs. Users will be
able to download and compile the code
and use...
Enter
PocketAnalyzerPCA
. PocketAnalyzerPCA combines a
geometric algorithm for detecting
pockets in proteins with Principal
Component Analysis and clustering. This
enables visualizati...
Enter
PyBact
. PyBact is an open source software
written in Python for Bacterial
Identification. The software generates
simulated data matrix which accurately
represents th...
Enter
composight to run in Linux online
.Composight is a cross-platform toolkit
for 3D-image processing in the domain of
composite materials science. It is
written in C++ and provides small,
problem-...
Enter
Bio-SPICE
. Our goal is to create an open source
framework and toolset for modeling
dynamic cellular network functions, and
to develop a user community committed to
usin...
Enter
S4PM
. The Simple, Scalable, Script-based
Science Processor for Measurements
(S4PM) is a system for highly automated
processing of science data, scalable up
to larg...
Enter
cuDF
. Built based on the Apache Arrow
columnar memory format, cuDF is a GPU
DataFrame library for loading, joining,
aggregating, filtering, and otherwise
manipulat...
Enter
S4PM to run in Linux online
.The Simple, Scalable, Script-based
Science Processor for Measurements
(S4PM) is a system for highly automated
processing of science data, scalable up
to large...
Enter
SPADE
. The Structural Proteomics Application
Development Environment is a Python tool
kit for developing and deploying
bioinformatics applications. Handles
graphics...
Enter
dupost to run in Linux online
.A coupled dual porosity Stokes model
implemented with FEniCS. References: 1.
C. Douglas, X. Hu, B. Bai, X. He, M. Wei
and J. Hou, "A Data Assimilation Ena...
Enter
BioNLP-Corpora
. BioNLP-Corpora is a repository of
biomedically and linguistically
annotated corpora and biomedical data
sources. There are many resources
available in separa...
Enter
ProTag
. ProTag integrates biological web
services and online databases seamlessly
into the Microsoft Office applications
Word, Excel and PowerPoint. It is
extensible...
Enter
The Protein Similarity Network
. This is the protein similarity
network - PSIN. Here, the nodes are
human proteins and they are linked only
if they share considerable sequence
similarity. We...
Enter
bruread
. bruread is a program to read and
display NMR data in the Bruker XWIN-NMR
format. The program has a command-line
interface and a graphic display based on
gnup...
Enter
Neural Networks for Number Recognition to run in Windows online over Linux online
.The source code for my(Ben Thompson)
10th grade neural network science fair
project. UPDATE: Got 2nd in the regional
fair, 3rd in the state, 4th in
internatio...
Enter
Kedro
. Kedro is an open sourced Python
framework for creating maintainable and
modular data science code. Provides the
scaffolding to build more complex data
and ma...
Enter
WSciParser
. WSciParser (Web Science Parser) is a
handy small library created in C#.NET to
parse data from web science databases
(ISI Web, NCBI, PubMed.). Features:Full
e...
Enter
SeaBreeze
. SeaBreeze is a device driver library
that provides an interface to select
Ocean Optics spectrometers. It is
written in C/C++ and builds and runs on
Windows (...
Enter
openSputnik
. openSputnik is a robust distributed
platform for massive scale
precalculation of genetic and genomic
data using contemporary bioinformatics
methods. Annotate...
Enter
SpectralWorks
. Program for viewing, editing,
manipulating, and analyzing absorbance
spectra. Simple arithnetic includes
making linear combinatins of up to 10
spectra. Advan...
Enter
OTforge
. OpenTopography facilitates community
access to high-resolution, Earth
science-oriented, lidar topography data,
& related tools. OTforge serves as
our ope...
Enter
WSciParser to run in Windows online over Linux online
.WSciParser (Web Science Parser) is a
handy small library created in C#.NET to
parse data from web science databases
(ISI Web, NCBI, PubMed.) Features:Full
ext...
Enter
Evrika
. Evrika is a science simulator and
advanced calculator, which is based on
modules. Modules are libraries
containing definitions of concepts that
can be used i...
Enter
HostDesigner
. Although many potential applications
exist in chemistry and material science,
software to allow the general
application of de novo structure-based
design met...
Enter
PPICompare
. PPICompare detects statistically
significant rewiring events in
protein-protein interaction networks -
even if they are caused by alternative
splicing - and ...
Enter
DEEP
. The Differential Evolution,
introduced in 1995 by Storn and Price,
considers the population, that is
divided into branches, one per
computational node. The D...
Enter
OTforge to run in Windows online over Linux online
.OpenTopography facilitates community
access to high-resolution, Earth
science-oriented, lidar topography data,
& related tools. OTforge serves as
our open...
Enter
papco
. PaPCo is modular IDL software for the
analysis, distribution and display of
science data products. Primarily used by
the space science community but in princ...
Enter
sciNote
. sciNote is an open source electronic
lab notebook (ELN) that helps you manage
your laboratory work and stores all your
experimental data in one place. sciNot...
Enter
TraceViewer
. TraceViewer provides several
functionalities needed by any biologist
who wants to efficiently analyse his/her
trace data. Audience: Education,
Healthcare Ind...
Enter
Turkish Human Mutation Database
. The rapid accumulation of human
mutation data has led to the idea of
establishing a national/ethnic database
in Turkey endorsed by HUGO-MDI/HGVS. The
interdi...
Enter
papco to run in Windows online over Linux online
.PaPCo is modular IDL software for the
analysis, distribution and display of
science data products. Primarily used by
the space science community but in
princi...
Enter
BYU EDIF Tools
. An API for manipulating EDIF netlists
in Java. We use this API to analyze
netlists as a part of our FPGA
reliability project. We intend to keep
the API as ge...
Enter
BibGlimpse MEDLINE Retriever
. Literature management tools typically
require that bibliography is typed in by
hand for each PDF reprint added. The
BibGlimpse retriever presented here can
a...
Enter
BYU EDIF Tools to run in Windows online over Linux online
.An API for manipulating EDIF netlists
in Java. We use this API to analyze
netlists as a part of our FPGA
reliability project. We intend to keep
the API as gen...
Enter
composight
. Composight is a cross-platform
toolkit for 3D-image processing in the
domain of composite materials science.
It is written in C++ and provides small,
problem...
Enter
PPIXpress
. Although protein-protein interaction
networks are an ubiquitous component of
modern systems biology, comparatively
few efforts have been made to tailor
their...
Enter
S4PM
. The Simple, Scalable, Script-based
Science Processor for Measurements
(S4PM) is a system for highly automated
processing of science data, scalable up
to larg...
Enter
dupost
. A coupled dual porosity Stokes model
implemented with FEniCS. References: 1.
C. Douglas, X. Hu, B. Bai, X. He, M. Wei
and J. Hou, "A Data Assimilation En...
Enter
SPADE
. The Structural Proteomics Application
Development Environment is a Python tool
kit for developing and deploying
bioinformatics applications. Handles
graphics...
Enter
composight to run in Windows online over Linux online
.Composight is a cross-platform toolkit
for 3D-image processing in the domain of
composite materials science. It is
written in C++ and provides small,
problem-...
Enter
S4PM to run in Windows online over Linux online
.The Simple, Scalable, Script-based
Science Processor for Measurements
(S4PM) is a system for highly automated
processing of science data, scalable up
to large...
Enter
DDMaker
. DDMaker perform local density
analysis and generates pseudocolor maps
of the spatial distribution of imaged
cellular structures in 2D images,
starting from e...
Enter
dupost to run in Windows online over Linux online
.A coupled dual porosity Stokes model
implemented with FEniCS. References: 1.
C. Douglas, X. Hu, B. Bai, X. He, M. Wei
and J. Hou, "A Data Assimilation Ena...
Enter
SeaBreeze
. SeaBreeze is a device driver library
that provides an interface to select
Ocean Optics spectrometers. It is
written in C/C++ and builds and runs on
Windows (...
Enter
OpenCFU
. OpenCFU is a completely open source
lightweight application designed to
enumerate clustered circular objects
such as bacterial colonies. It can
handle digita...
Enter
Chemistry Calculator
. Solve equations, view charts and
graphs, make conversions, balance
equations and more. Chemistry
Calculator. Audience: Healthcare
Industry, Science/Research,...
Enter
Evrika
. Evrika is a science simulator and
advanced calculator, which is based on
modules. Modules are libraries
containing definitions of concepts that
can be used i...
Enter
PPICompare
. PPICompare detects statistically
significant rewiring events in
protein-protein interaction networks -
even if they are caused by alternative
splicing - and ...
Enter
Density-ratio based clustering to run in Linux online
.This site provides the source code of
two approaches for density-ratio based
clustering, used for discovering
clusters with varying densities. One
approach is...
Enter
sciNote
. sciNote is an open source electronic
lab notebook (ELN) that helps you manage
your laboratory work and stores all your
experimental data in one place. sciNot...
Enter
Density-ratio based clustering
. This site provides the source code of
two approaches for density-ratio based
clustering, used for discovering
clusters with varying densities. One
approach i...
Enter
CT4AM
. CT4AM is a cross-platform toolkit for
3D-image processing in the domain of
additive manufacturing for toolpath
visualisation or correlation to
tomographic da...
Enter
DEEP to run in Linux online
.The Differential Evolution, introduced
in 1995 by Storn and Price, considers
the population, that is divided into
branches, one per computational node.
The Di...
Enter
SpectralWorks
. Program for viewing, editing,
manipulating, and analyzing absorbance
spectra. Simple arithnetic includes
making linear combinatins of up to 10
spectra. Advan...
Enter
PPIXpress
. Although protein-protein interaction
networks are an ubiquitous component of
modern systems biology, comparatively
few efforts have been made to tailor
their...
Enter
Avogadro
. Avogadro is an advanced molecular
editor designed for cross-platform use
in computational chemistry, molecular
modeling, bioinformatics, materials
science an...
Enter
RAM
. The aim of this project is to realize
an implementation of a Random Access
Machine (which is a common tool in
theory of computer science). Audience:
Educatio...
Enter
pythia
. Pythia is a thermodynamically based
PCR primer design program. Audience:
Science/Research. Programming Language:
C, Python. Categories:Bio-Informatics,
Molec...
Enter
OpenSIMPLY
. OpenSIMPLY is an open source project
for simulation modeling in Delphi,
Lazarus, Free Pascal. Download
OpenSIMPLY at opensimply.org The project
is free compu...
Enter
pHp
. close. Audience: Healthcare Industry,
Science/Research, Education, Developers.
User interface: Web-based. Programming
Language: PHP. Categories:Communication...
Enter
BrainFolding
. Tools for analysing the degree of
folding in the human brain. Audience:
Science/Research. User interface:
Command-line. Programming Language: C.
Categories:M...
Enter
molR
. The "molR" is a set of R
functions for working with and
manipulating (bio)molecular data.
Audience: Science/Research. Programming
Language: S/R. Cate...
Enter
OpenCFU
. OpenCFU is a completely open source
lightweight application designed to
enumerate clustered circular objects
such as bacterial colonies. It can
handle digita...
Enter
SAOSIS
.SAOSIS is a Java-based Open-Source
library designed to help Life Science
organizations manage bioinformatic data.
Audience: Science/Research. Programming
Lang...
Enter
XGBoost
. XGBoost is an optimized distributed
gradient boosting library, designed to
be scalable, flexible, portable and
highly efficient. It supports
regression, clas...
Enter
JANPA
. Audience: Science/Research,
Education. User interface: Command-line.
Programming Language: Java.
Categories:Molecular Science, Chemistry,
Physics...
Enter
3D HIV
. A project to create an interactive,
scientifically-accurate 3D model of the
HIV virus. Particularly intended for use
in education. Audience: Education, Scien...
Enter
Pgenesniffer
. This tool will allow individuals to
find and quantify the overlap of
variants with pseudogenic sequences.
Audience: Science/Research. Programming
Language: S...
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CUBS to run in Linux online
.Chicago Utilities for Bioinformatic
Science Audience: Science/Research, End
Users/Desktop. User interface:
Web-based. This is an application that
can also be ...
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VariScan
. VariScan is a software package for
the analysis of DNA sequence
polymorphisms at the whole genome scale.
Audience: Science/Research. User
interface: Command-...
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adicell
. Finite difference modeling of human
head electromagnetics using alternating
direction implicit (ADI) method ported
to the IBM Cell Broadband Engine.
Audience...
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JMolDraw
. 2-D chemical structure drawing
program. Audience: Science/Research.
User interface: Java Swing. Programming
Language: Java. Categories:Molecular
Science, Che...
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Density-ratio based clustering
.This site provides the source code of
two approaches for density-ratio based
clustering, used for discovering
clusters with varying densities. One
approach is...
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Xpose
. Xpose - an S/R based population PK/PD
model building aid for NONMEM. Audience:
Science/Research. User interface:
Console/Terminal. Programming Language:
S/R....
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fgh
. FGH is program that solves
vibrational Schroedinger equation using
the Fourier grid hamiltonian method. The
program requires potential energy
surface and G-m...
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Pyrsstep
. SAS macros and sample code for
stratifying (and aggregating) data
according to time-varying covariates.
Especially useful for Poisson
regression, Cox regress...
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Moleculizer
. Moleculizer is a tool for simulating
and generating biochemical reaction
networks that are specified through a
set of rules for protein-protein
interactions....
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cnsFace
. cnsFace is a GUI for the
Crystallography and NMR System.
Audience: End Users/Desktop,
Science/Research. User interface:
wxWidgets. Programming Language: Pyth...
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DataShot to run in Linux online
.Applications to support the efficient
capture of data from natural science
collections specimens (particularly
entomological collections), by
facilitating pre...
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SrsUrlApi
. A Perl client library to access
Sequence Retrieval System (SRS) servers
using the REST/CGI API provided by SRS.
Audience: Science/Research, Developers.
Progr...
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Vimes
. Vimes: Visual interface to materials
simulations - An open source,
python/Open GL interface to molecular
and materials simulation programs.
Audience: Science...
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TauFactor
. Please contact the author at
[email protected] for any questions
or if you wish to cite this application
in a academic study. Journal paper
available he...
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FlowtificX
. FlowtificX is a scientific workflow
modelling, collaboration, execution and
tracing tool that allows scientists to
concentrate on their science and to
allevi...
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TAUTGEN
. Tautomer generator is a program that
generates a set of molecules (tautomers)
from a molecular core and number of
hydrogen atoms. Audience:
Science/Research....
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SigViewer
. SigViewer is a viewer for biosignals
such as EEG, EMG, and ECG. SigViewer
supports various file formats. Besides
viewing biosignals, SigViewer can also
creat...
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MOSGWA
. MOSGWA is a tool for genome wide
association studies (GWAS). It currently
implements a search strategy using
logistic regression and linear
regression. Audie...
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BpMatch
. BpMatch is an algorithm that, given 2
strings S and T, compute the maximum
coverage of T using only subequence or
reversed complemented subsequences of S,
of...
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Phobos Application
. Phobos is to be used for recording
rodents' behavior during the
thigmotaxis (open-field) and the
elevated plus-maze tests. Phobos
provides the possibilit...
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Open3DGRID
. An open-source software aimed at
high-throughput generation of molecular
interaction fields (MIFs). Audience:
Science/Research. User interface:
Command-line,...
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EPLF
. The Electron Pair Localization
Function (EPLF) helps to understand
chemical bonding in molecular systems.
This code uses a modified formulation
which allows ...
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hustthesis
. HUST Thesis (hustthesis) is a project
initiated by graduate students of
Huazhong Univ. of Science and Technology
(HUST), China to deliver a LaTeX
template fo...
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FMR Eyetrack
. FMR Eyetrack is a SPM plugin that
allows to directly estimate the point of
gaze from the functional MRI data
without the help of a dedicated eye
tracker. I a...
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lrrr
. Extraction of binding sites of
ligands and search for unknown binding
sites on apoproteins. Some call it
docking. Some call it binding site
detections. Some ...
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Density-ratio based clustering to run in Windows online over Linux online
.This site provides the source code of
two approaches for density-ratio based
clustering, used for discovering
clusters with varying densities. One
approach is...
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libamtrack
. A library contaning amorphous track
based algorithms and auxiliary routines
for the prediction of detector response
and radiobiological cross-sections in
hea...
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vbFRET
. This is a Matlab software package for
single molecule FRET data analysis.
Audience: Engineering, Science/Research.
Programming Language: MATLAB.
Categories:B...
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Aghermann
. A sleep research experiment manager,
EDF (EEG, EMG etc) with power spectrum
analysis and visualisation, and Process
S ('sleep pressure') estimation
f...
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PsyScript - getting experiments done
. Application for scripting Psychology
experiments, similar to SuperLab, MEL or
EPRIME. Audience: Education, Healthcare
Industry, Science/Research. Programming...
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matNMR
. MatNMR is a highly flexible toolbox
for processing 1D and 2D NMR/EPR spectra
in MATLAB and creating high-quality 1D,
2D or 3D plots. Fully GUI and/or script-...
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TEM-simulator
. Simulator for transmission electron
microscope images and tilt series of
biological samples. Audience: Advanced
End Users, Science/Research. User
interface: ...
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PowerMath CAS
. PowerMath is a computer algebra
system designed for all science. It has
the ability, but not the limitation, to
complete advanced or simple science and
math ...
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PiViTi
. This pharmacovigilance web
application permits you to process a
query on the Adverse Event Reporting
System (AERS) data which is published by
the U.S. Food a...
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CT4AM
. CT4AM is a cross-platform toolkit for
3D-image processing in the domain of
additive manufacturing for toolpath
visualisation or correlation to
tomographic da...
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PolyJen
. PolyJen: Polymerization in a digital
laboratory. Audience: Science/Research,
End Users/Desktop. User interface: Java
Swing. Programming Language: Java. Datab...
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Vet+
. Vet+ Is currently being renewed.
Downloading is not recommended until
further notice. Audience: Healthcare
Industry, Science/Research. User
interface: Web-ba...
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seq2svm
. Machine learning approaches to
finding features that correlate with the
function of small interfering RNAs.
Audience: Science/Research, Advanced End
Users. U...
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Gen3D to run in Linux online
.Gen3D is an application designed to
determine three-dimensional genome and
chromosome models. It uses chromosomal
contact data to construct
three-dimensional ...
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FlowtificX to run in Linux online
.FlowtificX is a scientific workflow
modelling, collaboration, execution and
tracing tool that allows scientists to
concentrate on their science and to
allevia...
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Open3DQSAR
. Open3DQSAR is a free, open-source
tool written in C aimed at pharmacophore
exploration by high-throughput
chemometric analysis of molecular
interaction field...
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psicode
. PSI is an open-source program for
computing molecular properties using
high-accuracy, ab initio, quantum
mechanical models. Audience: Education,
Science/Rese...
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Autoencoders
. This is the source code for my 11th
grade science fair project. It involves
the use of autoencoders to improve error
rates with small amounts of labeled data...
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HAPMIXMAP
. A program to model HapMap haplotypes
in genetic association studies using tag
SNP genotypes. Please visit
http://www.ucd.ie/genepi/hapmixmap for
more details...
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DATA system
. DATA system is developed to manage
scientific experimental data especially
in materials science field. Audience:
Science/Research. User interface:
Web-based....
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ConGENER
. ConGENER package is a set of
combinatorial-computational tools to
study families of halogen substituted
molecules, so called congeners.
Audience: Healthcare ...
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MERRYts
. MERRYts is the Most Efficient Reader
for Representing Your Terminology
System. One GUI for all (medical)
Terminology Systems. Audience:
Information Technolog...
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ED Software
. ED Software project contains several
programs used (mostly) for processing
gas-phase electron diffraction (GED)
experimental data. Audience:
Science/Research...
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OOPS
. OOPS means Open Protein Simulator, it
is a program designed to serve as a test
bed for different algorithms for protein
folding, dynamics and structure predi...
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PySpline
. PySpline is a graphical,
cross-platform program for processing
X-ray absorption spectroscopy (XAS) and
Extended X-ray absorption fine structure
(EXAFS) data....
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gfit
. gfit creates an interface between
computational models and experimental
data and provides tools for their
analysis. Audience: Developers,
Education, Science/...
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FluoroCorrect
. FluoroCorrect is a Matlab-based, open
source software package designed for
correcting image deformations introduced
by X-ray image intensifiers in
fluoroscop...
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Eventseer
. Eventseer is a search engine for
computer science conference and workshop
events. It digests call-for-paper emails
and extracts and indexes relevant
informat...
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PyMOlyze
. PyMOlyze is a graphical program to
analyze the results of quantum chemistry
(HF/DFT) calculations. Features include
various population analyses, fragment
ana...
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Tree Visualisation with Visual Cues
. This project extends a previous work
on node link tree visualisation and
interaction by providing visual clues on
hidden structures. We adopt DOITree from
Pr...
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